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Why no OUs in Azure AD
I'm starting to look at Intune for managing our desktops. I have created a dynamic group and pointed that at a particular OU but I've realised it never gets any members as there are no OUs in Azure A...
Sadly, administrative units are good for nothing. They have so many limitations, they're practically just a "proof of concept". You will not be able to use them in Intune, or anything else for that matter.
And in general, if you want a "traditional" desktop management, based on OUs/GPOs and so on, Azure AD and Intune are NOT the solution for it. AD DS might get closer, but personally I'd stick with good old proven methods...
Check whether the recently announced https://blogs.technet.microsoft.com/intunesupport/2017/08/07/using-the-new-role-based-access-controls-in-intune/ feature in Intune matches your requirement.