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duntlessOutlook's avatar
duntlessOutlook
Copper Contributor
Apr 09, 2026

Email Showing as Quarantined in a Message Trace, but Not Showing up in MS Defender

A customer of ours was waiting on an email to arrive and to help figure out where the email was or if it was sent yet we ran a message trace. The message trace showed that the email was sent to quarantine. With this information in mind, I went to MS Defender > Email & collaboration > Review > Quarantine but could not find the message. 

 

I modified some of the filters and could not get the quarantined message to appear. I triple checked the filters I created and made sure the information was correct. I also removed all filters and looked for the time period the email came in, but could not find it.

 

Not sure if this is related, but this email had a significant delay likely coming from the sender.

  Any thoughts or ideas? Or anything that I am missing?

6 Replies

  • vanessatamora's avatar
    vanessatamora
    Copper Contributor

    Shot in the dark but do you have access to email explorer in the security portal?  It has a lot of useful info and the Open email entity after you click a message is really helpful.

    https://security.microsoft.com/threatexplorerv3

     

    This is probably not related and I have no hard proof but I think April 8th something changed.  A lot of email started going into our Junk folders from our relay servers (sadly, yes we still have some apps using this) scanners we switched to OAuth but we had a rough end of the week once it came to light. 

  • Open a support case with MS, you might need to provide them Network Message IDs to be able to see them in quarantine.

    • duntlessOutlook's avatar
      duntlessOutlook
      Copper Contributor

      Unfortunately, we can contact ms support through admin center because licensing was purchased through a reseller and not directly from Microsoft. Reseller support is not an option. Unless there is another way to reach out to ms support, I couldn't get very far with that. 

      • DeepakRandhawa's avatar
        DeepakRandhawa
        Iron Contributor

        We had same issue with Zapped emails and had to provide them with these to be able to see them in quarantine.

  • You should be able to filter quarantined messages based on the MessageID, which in turn you can get from the message trace:

    Get-QuarantineMessage -MessageId "<blabla-AB4D661B46@blabla.com>"

    • duntlessOutlook's avatar
      duntlessOutlook
      Copper Contributor

      Even when filtering by the message ID, I still do not see the message in quarantine. This is through MS Defender portal not PowerShell. Based on your reply, should I try via PowerShell? Could MS Defender be bugging out and not showing this message?