For what I've heard it is not that uncommon, specially the CPU drift. Drift is a divergence in CPU clock values. Systems that have multiple CPUs can produce different CPU clock values for the same point in time. Although it is not common, CPUs may experience clock separation over time.
The machine configuration was something like this:
OS Name Microsoft(R) Windows(R) Server 2003, Enterprise Edition
Version 5.2.3790 Service Pack 2 Build 3790
System Type X86-based PC : 4 processors + hyperthreading (8 core)
Core : Processor x86 Family 15 Model 33 Stepping 2 AuthenticAMD ~2396 Mhz
Ater installation of SQL Server 2005 SP2, some errors started to get logged in the SQL Server logs. Check for the following error:
(...) 2008-10-14 01:32:25.810 Server The time stamp counter of CPU on scheduler id 1 is not synchronized with other CPUs.
We applied a patch, that it's main goal is to improve some PC gaming video performance. It worked very good because the patch works with RDTSC (Read Time Stamp Counter). Now the timing values are ok!