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Hi matthlock25, You are correct, the documented limit is 100 per object. https://learn.microsoft.com/en-us/mem/intune/fundamentals/scope-tags#assign-scope-tags-to-other-objects
Please use the Give Feedback to Microsoft to provide your requirements to the team. Find it at the top right corner of the MEM console.
Thanks. I already have, about a year ago.
This is a real inconvenience for the affected admins, especially when using Intune for Education as they don't have the screen of the wizard to remove scope tags to reduce them below the limit.
We're working around it for now.